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1

Data Analysis Strategies in Medical Imaging

Parmar, Chintan, Barry, Joseph D., Hosny, Ahmed, Quackenbush, John, Aerts, Hugo JWL

Journal:

Clinical Cancer Research

Year:

2018

Language:

english

File:

PDF, 498 KB

english, 2018

2

Respiratory Muscle Training and Cognitive Function Exercising at Altitude

Quackenbush, Joseph, Duquin, Aubrey, Helfer, Samuel, Pendergast, David R.

Journal:

Aerospace Medicine and Human Performance

Year:

2016

Language:

english

File:

PDF, 643 KB

english, 2016

3

Maporal Hantavirus Causes Mild Pathology in Deer Mice (Peromyscus maniculatus)

McGuire, Amanda, Miedema, Kaitlyn, Fauver, Joseph, Rico, Amber, Aboellail, Tawfik, Quackenbush, Sandra, Hawkinson, Ann, Schountz, Tony

Journal:

Year:

2016

Language:

english

File:

PDF, 22.92 MB

english, 2016

4

GCOD - GeneChip Oncology Database

Fenglong Liu, Joseph A White, Corina Antonescu, Daniel Gusenleitner, John Quackenbush

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.39 MB

english, 2011

5

Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly

Scott C. Fahrenkrug, Timothy P.L. Smith, Brad A. Freking, Jennifer Cho, Joseph White, Jeff Vallet, Tommy Wise, Gary Rohrer, Geo Pertea, Razvan Sultana, John Quackenbush, John W. Keele

Journal:

Mammalian Genome

Year:

2002

Language:

english

File:

PDF, 97 KB

english, 2002

6

Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index

TadS. Sonstegard, Anthony V. Capuco, Joseph White, Curtis P. Van Tassell, Erin E. Connor, Jennifer Cho, Razvan Sultana, Larry Shade, James E. Wray, Kevin D. Wells, John Quackenbush

Journal:

Mammalian Genome

Year:

2002

Language:

english

File:

PDF, 181 KB

english, 2002

7

Comparative gene expression analysis in mouse models for multiple sclerosis, Alzheimer's disease and stroke for identifying commonly regulated and disease-specific gene changes

Vivian Tseveleki, Renee Rubio, Sotiris-Spyros Vamvakas, Joseph White, Era Taoufik, Edwige Petit, John Quackenbush, Lesley Probert

Journal:

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

8

Electronic Structure of β-Na x V 2 O 5 ( x ≈ 0.33) Polycrystalline Films: Growth, Spectroscopy, and Theory

Chen, Bo, Laverock, Jude, Newby, Dave, Su, Ting-Yi, Smith, Kevin E., Wu, Wei, Doerrer, Linda H., Quackenbush, Nicholas F., Sallis, Shawn, Piper, Louis F. J., Fischer, Daniel A., Woicik, Joseph C.

Journal:

The Journal of Physical Chemistry C

Year:

2014

Language:

english

File:

PDF, 3.85 MB

english, 2014

9

Apple Scald, Use of Alkaline Permanganate for Control in Refrigerated Storage

Kuc, Joseph., Henze, R. E., Baker, C. E., Quackenbush, F. W.

Journal:

Journal of Agricultural and Food Chemistry

Year:

1953

Language:

english

File:

PDF, 2.79 MB

english, 1953

10

Apple Scald, Production and Control in the Laboratory

Kuc, Joseph., Henze, R. E., Quackenbush, F. W.

Journal:

Journal of Agricultural and Food Chemistry

Year:

1953

Language:

english

File:

PDF, 420 KB

english, 1953

11

Analyzing networks of phenotypes in complex diseases: methodology and applications in COPD

Chu, Jen-hwa, Hersh, Craig P, Castaldi, Peter J, Cho, Michael H, Raby, Benjamin A, Laird, Nan, Bowler, Russell, Rennard, Stephen, Loscalzo, Joseph, Quackenbush, John, Silverman, Edwin K

Journal:

BMC Systems Biology

Year:

2014

Language:

english

File:

PDF, 823 KB

english, 2014

12

THE SCHISTOSOMA MANSONI GENE INDEX: GENE DISCOVERY AND BIOLOGY BY RECONSTRUCTION AND ANALYSIS OF EXPRESSED GENE SEQUENCES

Merrick, Joseph M., Osman, Ahmed, Tsai, Jennifer, Quackenbush, John, LoVerde, Philip T., Lee, Norman H.

Journal:

Journal of Parasitology

Year:

2003

Language:

english

File:

PDF, 1.09 MB

english, 2003

13

[American Thoracic Society American Thoracic Society 2012 International Conference, May 18-23, 2012 • San Francisco, California - ()] C71. MAJOR IMPACT OF MICRO-RNA FUNCTION - Characterizing The Small RNA Transcriptome Associated With COPD And ILD Using Next Generation Sequencing

Campbell, Joshua D., Luo, Lingqi, Xiao, Ji, Liu, Gang, Gerrein, Joseph, Juan-Guardela, Brenda, Tedrow, John, Aleksyev, Yuriy, Yang, Ivana, Correll, Mick, Geraci, Mark, Quackenbush, John, Sciurba, Fran

Year:

2012

Language:

english

File:

PDF, 19 KB

english, 2012

14

Deep subgap feature in amorphous indium gallium zinc oxide: Evidence against reduced indium

Sallis, Shawn, Quackenbush, Nicholas F., Williams, Deborah S., Senger, Mikell, Woicik, Joseph C., White, Bruce E., Piper, Louis F. J.

Journal:

physica status solidi (a)

Year:

2015

Language:

english

File:

PDF, 482 KB

english, 2015

15

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 • Denver Colorado - ()] C22. PATHOBIOLOGY OF COPD: LESSONS FROM INFLAMMATORY MECHANISMS AND GENOMIC STUDIES - Microrna Expression Profiles In Emphysema

Tedrow, John, Juan-Guardela, Brenda, Pandit, Kusum, Gur, David, Leader, Joseph K., Landreneau, Rodney, Schwartz, David A., Geraci, Mark W., Quackenbush, John, Correll, Mick, Richards, Thomas, Chensny,

Year:

2011

Language:

english

File:

PDF, 19 KB

english, 2011

16

Deep subgap feature in amorphous indium gallium zinc oxide: Evidence against reduced indium (Phys. Status Solidi A 7∕2015)

Sallis, Shawn, Quackenbush, Nicholas F., Williams, Deborah S., Senger, Mikell, Woicik, Joseph C., White, Bruce E., Piper, Louis F. J.

Journal:

physica status solidi (a)

Year:

2015

File:

PDF, 7.53 MB

2015

17

Respiratory Muscle Training and Exercise Endurance at Altitude

Helfer, Samuel, Quackenbush, Joseph, Fletcher, Michael, Pendergast, David R.

Journal:

Aerospace Medicine and Human Performance

Year:

2016

Language:

english

File:

PDF, 664 KB

english, 2016

18

The Schistosoma mansoni Gene Index: Gene Discovery and Biology by Reconstruction and Analysis of Expressed Gene Sequences

Joseph M. Merrick, Ahmed Osman, Jennifer Tsai, John Quackenbush, Philip T. LoVerde and Norman H. Lee

Journal:

Journal of Parasitology

Year:

2003

Language:

english

File:

PDF, 2.48 MB

english, 2003

19

A-SIDE: Video simulation of teen alcohol and marijuana use contexts.

Anderson, Kristen G, Brackenbury, Lauren, Quackenbush, Mathias, Buras, Morgan, Brown, Sandra a, Price, Joseph

Journal:

Journal of Studies on Alcohol and Drugs

Year:

2014

Language:

english

File:

PDF, 179 KB

english, 2014

20

Deep Sequencing of 71 Candidate Genes to Characterize Variation Associated with Alcohol Dependence

Clark, Shaunna L., McClay, Joseph L., Adkins, Daniel E., Kumar, Gaurav, Aberg, Karolina A., Nerella, Srilaxmi, Xie, Linying, Collins, Ann L., Crowley, James J., Quackenbush, Corey R., Hilliard, Christ

Journal:

Alcoholism: Clinical and Experimental Research

Year:

2017

Language:

english

File:

PDF, 301 KB

english, 2017

21

A-SIDE: Video Simulation of Teen Alcohol and Marijuana Use Contexts

Anderson, Kristen G, Brackenbury, Lauren, Quackenbush, Mathias, Buras, Morgan, Brown, Sandra A, Price, Joseph

Journal:

Journal of Studies on Alcohol and Drugs

Year:

2014

Language:

english

File:

PDF, 179 KB

english, 2014

22

Estimating gene regulatory networks with pandaR

Schlauch, Daniel, Paulson, Joseph N., Young, Albert, Glass, Kimberly, Quackenbush, John

Journal:

Year:

2017

Language:

english

File:

PDF, 152 KB

english, 2017

23

suppresses Mott physics while Peierls distortions persist

Quackenbush, Nicholas F., Paik, Hanjong, Holtz, Megan E., Wahila, Matthew J., Moyer, Jarrett A., Barthel, Stefan, Wehling, Tim O., Arena, Dario A., Woicik, Joseph C., Muller, David A., Schlom, Darrell

Journal:

Physical Review B

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

24

Exploring regulation in tissues with eQTL networks

Fagny, Maud, Paulson, Joseph N., Kuijjer, Marieke L., Sonawane, Abhijeet R., Chen, Cho-Yi, Lopes-Ramos, Camila M., Glass, Kimberly, Quackenbush, John, Platig, John

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 3.88 MB

english, 2017

25

Understanding Tissue-Specific Gene Regulation

Sonawane, Abhijeet Rajendra, Platig, John, Fagny, Maud, Chen, Cho-Yi, Paulson, Joseph Nathaniel, Lopes-Ramos, Camila Miranda, DeMeo, Dawn Lisa, Quackenbush, John, Glass, Kimberly, Kuijjer, Marieke Lyd

Journal:

Year:

2017

Language:

english

File:

PDF, 3.72 MB

english, 2017

26

Smooth quantile normalization

Hicks, Stephanie C, Okrah, Kwame, Paulson, Joseph N, Quackenbush, John, Irizarry, Rafael A, Bravo, Héctor Corrada

Journal:

Year:

2018

Language:

english

File:

PDF, 9.50 MB

english, 2018

27

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

Paulson, Joseph N., Chen, Cho-Yi, Lopes-Ramos, Camila M., Kuijjer, Marieke L., Platig, John, Sonawane, Abhijeet R., Fagny, Maud, Glass, Kimberly, Quackenbush, John

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 2.14 MB

english, 2017

28

Cancer subtype identification using somatic mutation data

Kuijjer, Marieke Lydia, Paulson, Joseph Nathaniel, Salzman, Peter, Ding, Wei, Quackenbush, John

Journal:

British Journal of Cancer

Year:

2018

Language:

english

File:

PDF, 1.25 MB

english, 2018

29

X-Ray Spectroscopy of Ultra-Thin Oxide/Oxide Heteroepitaxial Films: A Case Study of Single-Nanometer VO2/TiO2

Quackenbush, Nicholas, Paik, Hanjong, Woicik, Joseph, Arena, Dario, Schlom, Darrell, Piper, Louis

Journal:

Year:

2015

Language:

english

File:

PDF, 387 KB

english, 2015

30

NIST HAXPES at NSLS and NSLS-II

Weiland, Conan, Jaye, Cherno, Quackenbush, Nicholas F., Gann, Eliot, Fu, Zugen, Kirkland, Johnny P., Karlin, Barry A., Ravel, Bruce, Woicik, Joseph C., Fischer, Daniel A.

Journal:

Synchrotron Radiation News

Year:

2018

Language:

english

File:

PDF, 1.61 MB

english, 2018

31

Regulatory network changes between cell lines and their tissues of origin

Lopes-Ramos, Camila M., Paulson, Joseph N., Chen, Cho-Yi, Kuijjer, Marieke L., Fagny, Maud, Platig, John, Sonawane, Abhijeet R., DeMeo, Dawn L., Quackenbush, John, Glass, Kimberly

Journal:

Year:

2017

Language:

english

File:

PDF, 2.81 MB

english, 2017

32

Histopathological Image QTL Discovery of Immune Infiltration Variants

Barry, Joseph D., Fagny, Maud, Paulson, Joseph N., Aerts, Hugo J.W.L., Platig, John, Quackenbush, John

Journal:

Year:

2018

Language:

english

File:

PDF, 9.27 MB

english, 2018

33

Vitamin D Supplementation Improves Aerobic and Resistive Exercise in Men

Darr, Rachel L., Baker, Mark, Quackenbush, Joseph, Joyce, Donald, Wilding, Gregory, Burton, Harold, Horvath, Peter

Journal:

Medicine & Science in Sports & Exercise

Year:

2014

File:

PDF, 216 KB

2014

34

Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues

Lopes-Ramos, Camila M., Chen, Cho-Yi, Kuijjer, Marieke L., Paulson, Joseph N., Sonawane, Abhijeet R., Fagny, Maud, Platig, John, Glass, Kimberly, Quackenbush, John, DeMeo, Dawn L.

Journal:

Year:

2020

File:

PDF, 9.13 MB

2020

35

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] A95. CUTTING EDGE INSIGHTS TO THE PATHOBIOLOGY OF COPD AND INTERSTITIAL LUNG DISEASE - Emphysema Gene Expression Signatures

Tedrow, John, Juan-Guardela, Brenda, Gur, David, Leader, Joseph K., Schwartz, David A., Spira, Avrum, Geraci, Mark W., Quackenbush, John, Correll, Mick, Richards, Thomas, Chensny, Lara, Shapiro, Steve

Year:

2011

File:

PDF, 19 KB

2011

36

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] A95. CUTTING EDGE INSIGHTS TO THE PATHOBIOLOGY OF COPD AND INTERSTITIAL LUNG DISEASE - Divergent And Convergent Gene Expression Patterns In Well Phenotyped Patients With COPD And IPF

Tedrow, John, Juan-Guardela, Brenda, Gur, David, Leader, Joseph K., Schwartz, David A., Spira, Avrum, Geraci, Mark W., Quackenbush, John, Correll, Mick, Richards, Thomas, Chensny, Lara, Shapiro, Steve

Year:

2011

File:

PDF, 19 KB

2011

37

[American Thoracic Society American Thoracic Society 2011 International Conference, May 13-18, 2011 â¢ Denver Colorado - ()] D37. SYSTEMS BIOLOGY AND MOLECULAR PROFILING IN PULMONARY HEALTH AND DISEASE - MRNA And MicroRNA Expression Profiles Indicate Disease Severity In Patients With Idiopathic Pulmonary Fibrosis

Juan-Guardela, Brenda, Tedrow, John, Herazo, Jose D., Aboud, Caroline, Pandit, Kusum, Chensny, Lara, Gur, David, Leader, Joseph K., Benos, Panayiotis, Richards, Thomas, Correll, Mick, Quackenbush, Joh

Year:

2011

File:

PDF, 20 KB

2011

38

[American Thoracic Society American Thoracic Society 2012 International Conference, May 18-23, 2012 â¢ San Francisco, California - ()] A13. ADVANCES IN COPD PATHOGENESIS AND EXACERBATION SUSCEPTIBILITY - Elevated PTX3 Expression Is Specific For Emphysema Severity In Lung Tissue And Plasma Of Patients With COPD

Tedrow, John R., Juan-Guardela, Brenda, Zhang, Yingze, Kass, Daniel, Kahloon, Rehan A., Leader, Joseph K., Shapiro, Steven D., Geraci, Mark, Quackenbush, John, Schwartz, David A., Spira, Avrum, Sciurb

Year:

2012

File:

PDF, 18 KB

2012